PTM Viewer PTM Viewer

AT2G28290.1

Arabidopsis thaliana [ath]

P-loop containing nucleoside triphosphate hydrolases superfamily protein

78 PTM sites : 7 PTM types

PLAZA: AT2G28290
Gene Family: HOM05D000104
Other Names: CHR3,CHROMATIN REMODELING COMPLEX SUBUNIT R 3; SPLAYED; SYD

Link out to other resources with this protein ID : TAIR   |   PeptideAtlas   |   ARAPORT   |   PhosPhAt

For each protein all PTMs are highlighted by default in the respective protein sequence (right-hand side). One can adjust a selection of PTMs in the PTM table on the left-hand side. In addition, functional protein domains and sites can be underlined if desired.

In the PTM table per PTM the PTM position and type is indicated, as well as the plain peptide sequence that was identified by mass spectrometry. The respective proteomics study is indicated by a number, providing a link to consult the experimental details. Additional PTM meta-data includes various confidence measures such as peptide score provided by search algorithms, posterior error probability (PEP), precursor mass deviation (in ppm) and modification site probability. The available confidence meta-data can be consulted in the extended PTM table by clicking SHOW CONFIDENCE. However, in the default PTM table, a color-coding of confidence is provided with green indicating high confidence, olive medium confidence, grey low confidence, and no color an unassigned confidence. More details regarding this confidence assignment can be consulted in the tutorial or the Plant PTM Viewer manuscript.

Besides confidence measures, log2 fold changes between two conditions with significance values (P- or Q-values) are shown if provided in the respective publication. Log2 fold changes are colored in heatmap-like gradient (green = induced, red = repressed) and significant values are highlighted in green. To determine significance, we employed the threshold used in the respective publication. For more details on the quantitative measurements we refer to the experimental details and respective publication, as methodologies can differ.

On the bottom of the page one can send the whole protein or a part of the protein (i.e. a functional domain) to PTM Blast. This will display aligned protein sequences that potentially report aligned PTMs.

PTMs



PTM Type

Mod AA

Pos

Peptide

Exp ID

Conf
nta T 2 TSSSHNIELEAAKF80
ph S 3 TSSSHNIELEAAK114
ph S 89 SSCLPHPGGTQTEDSGSAHLAGSSQAVGVSNEGK114
ph S 91 SSCLPHPGGTQTEDSGSAHLAGSSQAVGVSNEGK114
ph S 131 QLGGSNSASQTFYQGSGTQSNR114
ph S 133 QLGGSNSASQTFYQGSGTQSNR114
ph S 135 QLGGSNSASQTFYQGSGTQSNR114
ph S 149 SFDRESPSNLDSTSGISQPHNR83
100
111a
111b
111c
111d
114
ph S 154 SFDRESPSNLDSTSGISQPHNR48
83
88
109
111a
111b
111c
111d
114
ph S 156 SFDRESPSNLDSTSGISQPHNR48
83
85
111a
111b
111c
111d
ESPSNLDSTSGISQPHNR114
ph S 160 SFDRESPSNLDSTSGISQPHNR114
ph T 161 ESPSNLDSTSGISQPHNR114
ph S 162 SFDRESPSNLDSTSGISQPHNR114
ph S 165 ESPSNLDSTSGISQPHNR114
ph S 193 RGESSLSWDQNMDNSQIFDSHK109
GESSLSWDQNMDNSQIFDSHK114
ph S 225 IEMPGNSGDIR114
ub K 367 LDEMDFSSKETER40
ac K 377 LGEKSFANTVFSDGQK98a
98b
98e
og S 398 LLASRIPSSQAQTQVAVSHSQLTFSPGLTK81
og T 402 IPSSQAQTQVAVSHSQLTFSPGLTK81
og S 407 IPSSQAQTQVAVSHSQLTFSPGLTK81
ph S 414 IPSSQAQTQVAVSHSQLTFSPGLTK114
ph T 434 TNDLSTSAVQLDEFHSSDEEEGNLQPSPK106
ph S 438 TNDLSTSAVQLDEFHSSDEEEGNLQPSPK106
ph S 449 TNDLSTSAVQLDEFHSSDEEEGNLQPSPK83
85
94
100
106
109
111a
111b
111c
111d
114
ph S 450 TNDLSTSAVQLDEFHSSDEEEGNLQPSPK83
85
94
100
106
111a
111b
111c
111d
114
ph T 706 TSNATDDETLIENEDESDQAK114
ph S 718 TSNATDDETLIENEDESDQAK114
ac K 1028 RVEDNLGSIGNAKSR101
ph S 1270 RESEIDIFESIDK114
ph S 1347 DGSMGGLDTHQYGR88
114
ph S 1385 LCQTESPDSPQGK88
106
114
ph S 1388 LCQTESPDSPQGK38
60
85
88
100
106
109
111a
111b
111c
111d
114
ph T 1426 SLANDTSNIPVENSSDTLLPTSPTQAITVQPMEPVRPQSHTLK100
ph T 1462 ALTPVSLSAVSR114
ph S 1558 RVEGVLHGSNSSITQR114
ph S 1569 TETATSLASDAEATK114
ph S 1572 TETATSLASDAEATK114
ph S 1586 SASEIVSR88
100
109
114
ph S 1601 ANEGSTSNPDQVSPVHSATTALR114
ph S 1607 ANEGSTSNPDQVSPVHSATTALR83
85
100
106
109
111a
111b
111c
111d
114
ph S 1611 ANEGSTSNPDQVSPVHSATTALR114
ph S 1647 DLDAPPGFDSGSHVQTLNVLENSSER114
ph S 1776 NLPSRGETPKR114
ph T 1780 NLPSRGETPKR114
me1 R 1788 RGQPLPATDASSAR123
ub K 1864 KQTADVTDVAR40
ph S 1906 TNVPDAQSPGEMNLHTVETHK18a
83
85
88
100
109
114
ph T 2008 CTADQLLGEK23
ph T 2023 LSQEGETTPASDGETCHLAEETASSLSYVR106
ph T 2024 LSQEGETTPASDGETCHLAEETASSLSYVR83
85
114
ph S 2027 LSQEGETTPASDGETCHLAEETASSLSYVR83
85
100
106
111a
111b
111c
111d
114
ph T 2050 SEPTASASTTAEPLPTDKLEK114
ph S 2052 SEPTASASTTAEPLPTDKLEK114
ph S 2070 NISFQDEVK83
88
114
ph S 2090 EAILLSSEEQTNVNSK114
ph T 2102 IETNSEELQASR106
ph S 2104 IETNSEELQASR88
100
106
114
ph S 2122 SVDVANQTVKEDEAK114
ph S 2190 SADIEQDPEESVFVQGVGRPK114
ph S 2234 LLVGCSVESEEKEK114
ph S 2408 VLVGCSVESEEKEK114
ph S 2433 TLQSHIPGDDADTEQNPEESVSNFDRPK114
ph S 2465 LLVGCSVESEEKEK114
ph S 2519 GFESETHAR114
ph S 2527 TDSGGIDRGNEVSENMSDGVK100
114
ph S 2541 GNEVSENMSDGVK114
ph S 2631 TNISSEQVPDVSHDLK114
ox C 2728 TCQPSSSTQPEDENR47
ph S 2731 TCQPSSSTQPEDENR106
ph S 2733 TCQPSSSTQPEDENR106
ph S 2745 NSLSHCEPSEVVEQR114
ph S 2750 NSLSHCEPSEVVEQR114
ph S 3125 THLADVVPSSSPTTMEK106
ph S 3126 THLADVVPSSSPTTMEK83
ph S 3127 THLADVVPSSSPTTMEK83
85
88
100
114
ph S 3482 DHIETAECELVDVSPGCSSQPEVK38
85
114
ph S 3496 FPPSPDAVGGMDVHLETVVTEDTDSNSSLPK114

Sequence

Length: 3574

MTSSSHNIELEAAKFLHKLIQDSKDEPAKLATKLYVILQHMKTSGKENTMPYQVISRAMDTVVNQHGLDIEALKSSCLPHPGGTQTEDSGSAHLAGSSQAVGVSNEGKATLVENEMTKYDAFTSGRQLGGSNSASQTFYQGSGTQSNRSFDRESPSNLDSTSGISQPHNRSETMNQRDVKSSGKRKRGESSLSWDQNMDNSQIFDSHKIDDQTGEVSKIEMPGNSGDIRNLHVGLSSDAFTTPQCGWQSSEATAIRPAIHKEPGNNVAGEGFLPSGSPFREQQLKQLRAQCLVFLALRNGLVPKKLHVEIALRNTFREEDGFRGELFDPKGRTHTSSDLGGIPDVSALLSRTDNPTGRLDEMDFSSKETERSRLGEKSFANTVFSDGQKLLASRIPSSQAQTQVAVSHSQLTFSPGLTKNTPSEMVGWTGVIKTNDLSTSAVQLDEFHSSDEEEGNLQPSPKYTMSQKWIMGRQNKRLLVDRSWSLKQQKADQAIGSRFNELKESVSLSDDISAKTKSVIELKKLQLLNLQRRLRSEFVYNFFKPIATDVEHLKSYKKHKHGRRIKQLEKYEQKMKEERQRRIRERQKEFFGGLEVHKEKLEDLFKVRRERLKGFNRYAKEFHKRKERLHREKIDKIQREKINLLKINDVEGYLRMVQDAKSDRVKQLLKETEKYLQKLGSKLKEAKLLTSRFENEADETRTSNATDDETLIENEDESDQAKHYLESNEKYYLMAHSIKENINEQPSSLVGGKLREYQMNGLRWLVSLYNNHLNGILADEMGLGKTVQVISLICYLMETKNDRGPFLVVVPSSVLPGWQSEINFWAPSIHKIVYCGTPDERRKLFKEQIVHQKFNVLLTTYEYLMNKHDRPKLSKIHWHYIIIDEGHRIKNASCKLNADLKHYVSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFQSNGESSAEEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLIRCEASAYQKLLMKRVEDNLGSIGNAKSRAVHNSVMELRNICNHPYLSQLHSEEVNNIIPKHFLPPIVRLCGKLEMLDRMLPKLKATDHRVLFFSTMTRLLDVMEDYLTLKGYKYLRLDGQTSGGDRGALIDGFNKSGSPFFIFLLSIRAGGVGVNLQAADTVILFDTDWNPQVDLQAQARAHRIGQKKDVLVLRFETVNSVEEQVRASAEHKLGVANQSITAGFFDNNTSAEDRKEYLESLLRESKKEEDAPVLDDDALNDLIARRESEIDIFESIDKQRKENEMETWNTLVHGPGSDSFAHIPSIPSRLVTEDDLKLLYETMKLNDVPMVAKESTVGMKRKDGSMGGLDTHQYGRGKRAREVRSYEEKLTEEEFEKLCQTESPDSPQGKGEGSERSLANDTSNIPVENSSDTLLPTSPTQAITVQPMEPVRPQSHTLKEETQPIKRGRGRPKRTDKALTPVSLSAVSRTQATGNAISSAATGLDFVSSDKRLEAASHPTSSLALTSPDLSGPPGFQSLPASPAPTPIRGRGRGRSRGRGAGRGRRVEGVLHGSNSSITQRTETATSLASDAEATKFALPRSASEIVSRVPKANEGSTSNPDQVSPVHSATTALRSDKAADKDLDAPPGFDSGSHVQTLNVLENSSERKAFAVKKRPLIQGVSSQHPGPNKQPLDLPVSTSSTLLGGGPVQNQNAVSSVCDGSKSPSEGRTYTALQGVTTAPSDATLPMSSQPSDATLPMSSQPVGSTVEAQEANVPSLPAALPAKRRVRNLPSRGETPKRQGKRRGQPLPATDASSARSTGLTPQIEVKVGNLSGTKAKFDAVAKEQPHFSQSVAPDIHSSGSLSQEIRRDTSGTGGSARKQTADVTDVARVMKEIFSETSLLKHKVGEPSATTRTNVPDAQSPGEMNLHTVETHKAEDSSGLKNQEALYNLSKADKLVSDIPHPVPGDLTTSGSVANKDVDIGSSKVAAENELVKIPGGDVDSSVIQLSLGNTLTAKSSLEKCTADQLLGEKLSQEGETTPASDGETCHLAEETASSLSYVRSEPTASASTTAEPLPTDKLEKNISFQDEVKTLNGDKREAILLSSEEQTNVNSKIETNSEELQASRTDEVPHVDGKSVDVANQTVKEDEAKHSVEIQSSMLEPDELPNAGQKGHSSIDLQPLVLVTSNENAMSLDDKDYDPISKSADIEQDPEESVFVQGVGRPKVGTADTQMEDTNDAKLLVGCSVESEEKEKTLQSLIPGDDADTEQDPEESVSDQRPKVGSAYTQMEDTDEAKLLMGCSVESEEKEKTLQSHIPGDDADTEKNPEESVSVQGVDRPKVGTTDTQMEDTNDAKLLVGCSVASEEKEKTLQSHIPGDDADTEQNPEESVSVQGVNRPKVGNANTQMEDTDEAKVLVGCSVESEEKEKTLQSHIPGDDADTEQNPEESVSNFDRPKDGTADTHMEDIDDAKLLVGCSVESEEKEKSLQSHMPSDDAVLHAPFENTKDSKGDDLHGESLVSCPTMEVMEQKGFESETHARTDSGGIDRGNEVSENMSDGVKMNISSVQVPDASHDLNVSQDQTDIPLVGGIDPEHVQENVDVPASPHGAAPNIVIFQSEGHLSPSILPDDVAGQLESMSNDEKTNISSEQVPDVSHDLKVSQDQTDIPPVGGIVPENLQEIVDVPASPHGVVPDVVVSQSEEIQSPSILPDDVPGQPDDGNCEKMDTMQNNTSIDIGITSGKTCQPSSSTQPEDENRNSLSHCEPSEVVEQRDSRDQVCIGSVESQVEISSAILENRSADIQPPQSILVDQKDIEESKEPGIESADVSLHQLADIQAEPSNLVDQMDIEESKEPGTESADVSLHQLADIQPGPSILVDQMDTEKSKEPGTESADVSLHQLADIQPGPSILVDQMDTEKSKEPGTESADVSLHQLADIQPGPSILVDQMDTEEFKNPDVSLHQLADIEPSLSISAVQKNIEDKDQSHVETAGSELVDVSAECSTEPQVQLPPSSEPVGDMHVHLGASKSEIVAEGTDFSSSLPKTEEENAKSQLADTEPSSSLTAVQKNIEDQVETAGCEFVVVSTGCSTEPQVQLPPSAEPVVAEGTEFPSSLLMTGVDNSSHLMTGVDNAKTHLADVVPSSSPTTMEKNIEAQDQDQVTTGGCGLVDVLTECSSEPQLQLPPSAEPVISEGTELATLPLTEEENADSQLANIEPSSSPSVVEKNIEAQDQDQVKTAGCELVSTGCSSEPQVHLPPSAEPDGDIHVHLKETEKSESMVVVGEGTAFPSSLPVTEEGNAESQLADTEPFTSPTVVEKNIKDQEQVETTGCGLVDDSTGCSSEPQVQLPPSAEPMEGTHMHLEETKKSETVVTEIQLADIDPSFSLIVVQTNIEDQDQIETGGCDLINVPSGCSTEPQIQLSSSAEPEEGMHIHLEAAMNSETVVTEGSELPSSLPMTEDENADGQLAEVEPSVSLTVEQTNIEEKDHIETAECELVDVSPGCSSQPEVKFPPSPDAVGGMDVHLETVVTEDTDSNSSLPKTEEKDAENPSDRLDGESDGTTVATVEGTCVESNSLVAEESNIEVPKDNEDV

ID PTM Type Color
nta N-terminal Acetylation X
ph Phosphorylation X
ub Ubiquitination X
ac Acetylation X
og O-GlcNAcylation X
me1 Monomethylation X
ox Reversible Cysteine Oxidation X
Multiple types X

Domains & Sites

Clear highlighted range 
Interpro Domains
Show IPR ID From To
IPR000330 757 1048
IPR001650 1074 1223
IPR014001 750 944
IPR014012 573 647
IPR014978 277 312
IPR029295 1280 1378
Sites
Show Type Position
Active Site 779

BLAST


Perform a BLAST search for this sequence, or a part of this sequence (minimum 50 characters)
A downloadable tutorial can be found here